Function reference • wham

Functions that users call directly
`read_asap3_dat()`	Read an ASAP3 .dat file into R
`prepare_wham_input()`	Prepare input data and parameters for WHAM model
`fit_wham()`	Fit WHAM model
`check_convergence()`	Check convergence of WHAM model
`project_wham()`	Project a fit WHAM model
`plot_wham_output()`	Plot WHAM output
`compare_wham_models()`	Compare multiple WHAM (or ASAP) models
`make_osa_residuals()`	Calculate one-step-ahead residuals
Helper functions and the like that users do not call
`set_age_sel0()`	Make one or more selectivity blocks with age-specific parameters
`fit_tmb()`	Fit TMB model using nlminb
`fit_peel()`	Fit model peeling off i years of data
`retro()`	Run retrospective analysis
`retro_res()`	Extract retrospective results for plotting
`mohns_rho()`	Calculate Mohn's rho for a WHAM model with peels
`prepare_projection()`	Prepare input data and parameters to project an already fit WHAM model
`wham_html()`	Create HTML file to view output plots in browser
`read_asap3_fit()`	Read ASAP3 fit
`read_wham_fit()`	Read WHAM fit
`check_estimability()`	Check for identifiability of fixed effects Originally provided by https://github.com/kaskr/TMB_contrib_R/TMBhelper Internal function called by `fit_tmb`.
`extract_fixed()`	Extract fixed effects Originally provided by https://github.com/kaskr/TMB_contrib_R/TMBhelper Internal function called by `check_estimability`.
`%>%`	Pipe function

Reference