Plot WHAM output

Generates many output plots and tables for a fit WHAM model.

plot_wham_output(
  mod,
  dir.main = getwd(),
  out.type = "png",
  res = 72,
  plot.opts = NULL
)

Arguments

mod

output from fit_wham

dir.main

character, directory to save plots to (default = getwd())

out.type

character, either 'html', 'pdf', or 'png' (default = 'png')

res

resolution to save .png files (dpi)

plot.opts

(optional) list of plot modifications

Details

out.type = 'pdf' makes one pdf file of all plots. out.type = 'png' (default) creates a subdirectory `plots_png`` in dir.main and saves .png files within. out.type = 'html' makes a html files for viewing plot .png files and html tables of parameter estimates in a browser. out.type = 'pdf' or 'png' makes LaTeX and pdf files of tables of parameter estimates. (tabs: 'input data', 'diagnostics', 'results', 'ref_points', 'retro', and 'misc').

plot.opts holds optional arguments to modify plots:

$ages.lab

Character vector, will change age labels in plots (default is 1:n.ages).

$font.family

Font family, e.g. "Times".

Plot functions are located in wham_plots_tables.R Table function is located in par_tables_fn.R

See also

fit_wham, wham_html, wham_plots_tables

Examples

if (FALSE) {
data("input4_SNEMAYT") # load fit wham model
mod <- fit_wham(input4_SNEMAYT)
plot_wham_output(mod)
}