These vignettes provide an introduction to fitting state-space assessment models using the WHAM package. They get progressively more complex, so we advise working through them in order unless you are only interested in a specific topic.
To run ALL examples (takes ~1 hour):# setwd("choose/where/to/save/output") # otherwise in working directory
library(wham)
wham.dir <- find.package("wham")
source(file.path(wham.dir, "example_scripts", "run_all_examples.R"))